Stadium: Jenny Craig Pavilion Round: 1
Home Manager: Sam Scholl Away Manager: Lorenzo Romar
| NCAAB | 2018/02/09 03:30 | San Diego v Pepperdine | L | 68-66 |
| NCAAB | 2017/12/30 21:00 | Pepperdine v San Diego | L | 66-74 |
| NCAAB | 2017/02/12 02:00 | Pepperdine v San Diego | W | 65-60 |
| NCAAB | 2017/01/07 21:00 | San Diego v Pepperdine | L | 76-68 |
| NCAAB | 2016/01/29 03:30 | San Diego v Pepperdine | W | 65-75 |
| NCAAB | 2016/01/22 02:00 | Pepperdine v San Diego | W | 76-58 |
| NCAAB | 2015/03/07 22:00 | Pepperdine v San Diego | W | 50-47 |
| NCAAB | 2015/02/08 01:00 | Pepperdine v San Diego | L | 50-72 |
| NCAAB | 2015/01/10 23:00 | San Diego v Pepperdine | W | 47-59 |
| NCAAB | 2012/03/01 12:00 | San Diego v Pepperdine | L | 76-54 |
| NCAAB | 2012/02/09 12:00 | Pepperdine v San Diego | L | 57-70 |
| NCAAB | 2012/01/26 12:00 | San Diego v Pepperdine | L | 65-56 |
| NCAAB | 2011/03/04 12:00 | Pepperdine v San Diego | W | 84-81 |
| NCAAB | 2011/02/05 12:00 | San Diego v Pepperdine | W | 63-70 |
| NCAAB | 2010/02/27 12:00 | San Diego v Pepperdine | L | 65-48 |
| NCAAB | 2010/01/30 12:00 | Pepperdine v San Diego | L | 44-66 |
| NCAAB | 2009/02/14 12:00 | Pepperdine v San Diego | W | 57-52 |
| NCAAB | 2009/01/15 12:00 | San Diego v Pepperdine | L | 62-47 |
| NCAAB | 2008/03/08 12:00 | San Diego v Pepperdine | L | 73-55 |
| NCAAB | 2008/03/01 12:00 | San Diego v Pepperdine | L | 77-73 |
| NCAAB | 2008/02/04 12:00 | Pepperdine v San Diego | L | 58-61 |
| NCAAB | 2007/03/02 12:00 | San Diego v Pepperdine | L | 95-82 |
| NCAAB | 2007/02/12 12:00 | San Diego v Pepperdine | L | 97-85 |
| NCAAB | 2007/01/13 12:00 | Pepperdine v San Diego | L | 67-71 |
| NCAAB | 2006/03/03 12:00 | San Diego v Pepperdine | L | 85-72 |
| NCAAB | 2006/02/04 12:00 | San Diego v Pepperdine | L | 84-71 |
| NCAAB | 2006/01/09 12:00 | Pepperdine v San Diego | W | 55-54 |
| NCAAB | 2005/03/05 12:00 | San Diego v Pepperdine | L | 86-80 |
| NCAAB | 2005/02/05 12:00 | San Diego v Pepperdine | L | 92-88 |
| NCAAB | 2005/01/07 12:00 | Pepperdine v San Diego | W | 83-67 |